Summary
11
task-level difference(s)
across added, removed and changed tasks
across added, removed and changed tasks
Task disposition · 11 total
Changed 8Only in A 0Only in B 3Unchanged 0
Of the changed tasks, 8 would have been recomputed rather than resumed.
Failures
0
Failed (A)
1
Failed (B)
1
New failures
Changes by layer
2
Software changed
3
Regressions
8
Outputs changed
1
Logs changed
3
Wiring edges changed
Wall-clock duration
B vs A: +37.6%
Failure rollup
What failed and why, rolled up by process, status and exit code, read from the run cache (no work directories needed). new = a failure signature seen only in Run B; resolved = one that was in Run A but is gone in Run B. This is a summary of the per-task status/exit already shown in Tasks, so it is informational and does not by itself affect the identical verdict.
| Process | Status | Exit | Run A | Run B | |
|---|---|---|---|---|---|
| QC | FAILED | 1 | 0 | 1 | new |
Run metadata
| Field | Run A | Run B |
|---|---|---|
| Pipeline | main.nf | main.nf |
| Run name auto | silly_euclid | suspicious_leibniz |
| Session ID auto | 22938421-310c-431d-b70f-ea597b9b3de5 | a029cb78-3eb8-4b8c-befa-5f5f248c73f0 |
| Status | SUCCEEDED | SUCCEEDED |
| Revision | 47e64accfc3825bf03ccb5e6f5c996d5 | 47e64accfc3825bf03ccb5e6f5c996d5 |
| Command auto | nextflow run main.nf -profile baseline | nextflow run main.nf -profile changed |
| Launched auto | Fri Sep 11 13:49:06 GMT-03:00 2026 | Fri Sep 11 13:49:28 GMT-03:00 2026 |
| Wall duration auto | 17.3s | 23.8s |
| Total task realtime auto | 24s | 33.2s |
| Task count | 8 | 11 |
| Cached tasks | 0 | 0 |
| Distinct processes | 4 | 5 |
| Nextflow version | 26.04.1 | 26.04.1 |
| Nextflow build | 12112 | 12112 |
| Container engine | docker | docker |
| Wave enabled | false | false |
| Fusion enabled | false | false |
The Nextflow version, build and runtime environment (container engine, Wave, Fusion) rows are read from each run's data-lineage store (lineage.enabled=true, Nextflow 25.04+) and appear only when a run recorded one. Per-run plugin versions are not shown: Nextflow does not persist them in the lineage store, the history file, or the task cache, so they cannot be compared.
Parameters & options
Pipeline params (--foo) and Nextflow options (-profile, -r) from each run's launch command, merged with any -params-file contents. The Source column shows whether a value came from the command line, a params-file, or both (the command line wins on conflict). Params that were not passed at launch — e.g. defaults, or values set inside nextflow.config or an activated profile — are resolved config, not launch input, so they appear in the Configuration layer rather than here.
| Flag | Run A | Run B | Source |
|---|---|---|---|
| -profile | baseline | changed | CLI |
Resolved configuration
Resolved from the current on-disk config files under ., applying each run's -profile/-c options — not a snapshot of the config at launch time.
⚠ Config provenance: The resolved configuration was rebuilt from the working tree at ef1a6f97bf, but both runs were launched at a different git revision (A: 47e64accfc, B: 47e64accfc). Any config difference driven by code changes between those revisions is NOT visible here — both sides were resolved against the current checkout. The working tree has uncommitted changes, so the resolved configuration reflects local edits that may not match either run.
| Key | Run A | Run B |
|---|---|---|
| docker.enabled | true | true |
| lineage.enabled | true | true |
| process.withName:ALIGN.container | community.wave.seqera.io/library/bowtie2_htslib_samtools_pigz:edeb13799090a2a6 | community.wave.seqera.io/library/bbmap_pigz:07416fe99b090fa9 |
| process.withName:INDEX_REF.container | community.wave.seqera.io/library/htslib_samtools:1.24--d697cfb9dce007cd | community.wave.seqera.io/library/htslib_samtools:1.24--d697cfb9dce007cd |
| process.withName:MARKDUP.container | — | quay.io/biocontainers/prinseq-plus-plus:1.2.3--hc90279e_1 |
| process.withName:MULTIQC.container | community.wave.seqera.io/library/seqkit:2.13.0--05c0a96bf9fb2751 | community.wave.seqera.io/library/seqkit:2.13.0--05c0a96bf9fb2751 |
| process.withName:QC.container | quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0 | community.wave.seqera.io/library/fastp:1.3.6--4df8d6c11b471bde |
docker.enabled = true lineage.enabled = true -process.withName:ALIGN.container = community.wave.seqera.io/library/bowtie2_htslib_samtools_pigz:edeb13799090a2a6 +process.withName:ALIGN.container = community.wave.seqera.io/library/bbmap_pigz:07416fe99b090fa9 process.withName:INDEX_REF.container = community.wave.seqera.io/library/htslib_samtools:1.24--d697cfb9dce007cd +process.withName:MARKDUP.container = quay.io/biocontainers/prinseq-plus-plus:1.2.3--hc90279e_1 process.withName:MULTIQC.container = community.wave.seqera.io/library/seqkit:2.13.0--05c0a96bf9fb2751 -process.withName:QC.container = quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0 +process.withName:QC.container = community.wave.seqera.io/library/fastp:1.3.6--4df8d6c11b471bde
-process.withName:ALIGN.container = community.wave.seqera.io/library/bowtie2_htslib_samtools_pigz:edeb13799090a2a6 +process.withName:ALIGN.container = community.wave.seqera.io/library/bbmap_pigz:07416fe99b090fa9 +process.withName:MARKDUP.container = quay.io/biocontainers/prinseq-plus-plus:1.2.3--hc90279e_1 -process.withName:QC.container = quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0 +process.withName:QC.container = community.wave.seqera.io/library/fastp:1.3.6--4df8d6c11b471bde
Processes
| Process | Run A | Run B | Δ | |
|---|---|---|---|---|
| ALIGN | 3 | 3 | 0 | unchanged |
| INDEX_REF | 1 | 1 | 0 | unchanged |
| MARKDUP | 0 | 3 | +3 | added |
| MULTIQC | 1 | 1 | 0 | unchanged |
| QC | 3 | 3 | 0 | unchanged |
Software & versions
The container image and Conda package spec each process ran with, read from the run cache. A change here means the tools (and their versions) differed between the two runs.
| Process | Container | Conda | |
|---|---|---|---|
| ALIGN | community.wave.seqera.io/library/bowtie2_htslib_samtools_pigz:edeb13799090a2a6 → community.wave.seqera.io/library/bbmap_pigz:07416fe99b090fa9 | — | changed |
| INDEX_REF | community.wave.seqera.io/library/htslib_samtools:1.24--d697cfb9dce007cd | — | unchanged |
| MARKDUP | — → quay.io/biocontainers/prinseq-plus-plus:1.2.3--hc90279e_1 | — | added |
| MULTIQC | community.wave.seqera.io/library/seqkit:2.13.0--05c0a96bf9fb2751 | — | unchanged |
| QC | quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0 → community.wave.seqera.io/library/fastp:1.3.6--4df8d6c11b471bde | — | changed |
Performance regressions
Task metrics that changed by ≥ 25% (positive = Run B slower/heavier), worst first. Same work marks tasks whose cache hash is identical, so the cost change is environmental rather than a different computation.
Regression (Run B worse)
Improvement (Run B better)
Same work (identical cache hash)
| Task | Metric | Run A | Run B | Δ | Same work |
|---|---|---|---|---|---|
| ALIGN (sampleC) | Realtime | 3.4s | 8s | +135.2% | |
| ALIGN (sampleA) | Realtime | 3.4s | 7.4s | +117.2% | |
| ALIGN (sampleB) | Realtime | 3.4s | 7.4s | +117.1% | |
| QC (sampleB) | Realtime | 1.7s | 1.3s | -26.2% | |
| QC (sampleA) | Realtime | 1.8s | 1.1s | -41.7% | |
| INDEX_REF (GRCh38) | Realtime | 6.8s | 716ms | -89.5% |
Resource efficiency
Peak measured CPU / memory versus what each process requested, read from the run cache. over-provisioned = used under 50% of the reservation (wasted allocation); tight = used 90%+ of it (risk of OOM kills or CPU throttling). Informational only — this never affects the identical verdict.
No CPU/memory usage metrics were recorded in either run cache.
Tasks
Showing meaningful differences only. Fields that always change between runs — run name, session id, work dir, timing and resource usage — are shown for context but not flagged. Re-run with --verbose to diff them too.
changed
ALIGN (sampleA)
ALIGN
▸
Realtime
| Field | Run A | Run B |
|---|---|---|
| hash auto | b7/c1578a | 92/7e0e04 |
| status | COMPLETED | COMPLETED |
| exit | 0 | 0 |
| container |
Run A community.wave.seqera.io/library/bowtie2_htslib_samtools_pigz:edeb13799090a2a6
Run B
community.wave.seqera.io/library/bbmap_pigz:07416fe99b090fa9
| |
| script |
Run A # Stand-in for alignment; sleep models a runtime difference between runs. sleep 1 echo "sample=sampleA" > sampleA.bam echo "aligner=bwa:0.7.17" >> sampleA.bam echo "reads_mapped=9310" >> sampleA.bam cat reference.idx >> sampleA.bam Run B # Stand-in for alignment; sleep models a runtime difference between runs. sleep 6 echo "sample=sampleA" > sampleA.bam echo "aligner=bwa-mem2:2.2.1" >> sampleA.bam echo "reads_mapped=9421" >> sampleA.bam cat reference.idx >> sampleA.bam | |
| cpus | 2 | 4 |
| memory | 4 GB | 8 GB |
| time | - | - |
| disk | - | - |
| realtime auto | 3.4s | 7.4s |
| %cpu | - | - |
| peak_rss | - | - |
| peak_vmem | - | - |
| rchar | - | - |
| wchar | - | - |
| read_bytes | - | - |
| write_bytes | - | - |
| syscr | - | - |
| syscw | - | - |
| vol_ctxt | - | - |
| inv_ctxt | - | - |
| attempt | 1 | 1 |
| queue | - | - |
| workdir auto | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/b7/c1578a6ca8a3f268139d22ba16e7e6 | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/92/7e0e0485e6326e89b6d3bf4c256fdd |
| tag | sampleA | sampleA |
| cpu_model | - | - |
| hostname | - | - |
| native_id auto | 53744 | 53994 |
changed
ALIGN (sampleB)
ALIGN
▸
Realtime
| Field | Run A | Run B |
|---|---|---|
| hash auto | 64/45018e | 90/cd0c62 |
| status | COMPLETED | COMPLETED |
| exit | 0 | 0 |
| container |
Run A community.wave.seqera.io/library/bowtie2_htslib_samtools_pigz:edeb13799090a2a6
Run B
community.wave.seqera.io/library/bbmap_pigz:07416fe99b090fa9
| |
| script |
Run A # Stand-in for alignment; sleep models a runtime difference between runs. sleep 1 echo "sample=sampleB" > sampleB.bam echo "aligner=bwa:0.7.17" >> sampleB.bam echo "reads_mapped=9310" >> sampleB.bam cat reference.idx >> sampleB.bam Run B # Stand-in for alignment; sleep models a runtime difference between runs. sleep 6 echo "sample=sampleB" > sampleB.bam echo "aligner=bwa-mem2:2.2.1" >> sampleB.bam echo "reads_mapped=9421" >> sampleB.bam cat reference.idx >> sampleB.bam | |
| cpus | 2 | 4 |
| memory | 4 GB | 8 GB |
| time | - | - |
| disk | - | - |
| realtime auto | 3.4s | 7.4s |
| %cpu | - | - |
| peak_rss | - | - |
| peak_vmem | - | - |
| rchar | - | - |
| wchar | - | - |
| read_bytes | - | - |
| write_bytes | - | - |
| syscr | - | - |
| syscw | - | - |
| vol_ctxt | - | - |
| inv_ctxt | - | - |
| attempt | 1 | 1 |
| queue | - | - |
| workdir auto | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/64/45018ec90826ab953a962f79388773 | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/90/cd0c62fd20f9e4905bd164ccba6cee |
| tag | sampleB | sampleB |
| cpu_model | - | - |
| hostname | - | - |
| native_id auto | 53743 | 53991 |
changed
ALIGN (sampleC)
ALIGN
▸
Realtime
| Field | Run A | Run B |
|---|---|---|
| hash auto | e1/3b0c3d | d8/55b119 |
| status | COMPLETED | COMPLETED |
| exit | 0 | 0 |
| container |
Run A community.wave.seqera.io/library/bowtie2_htslib_samtools_pigz:edeb13799090a2a6
Run B
community.wave.seqera.io/library/bbmap_pigz:07416fe99b090fa9
| |
| script |
Run A # Stand-in for alignment; sleep models a runtime difference between runs. sleep 1 echo "sample=sampleC" > sampleC.bam echo "aligner=bwa:0.7.17" >> sampleC.bam echo "reads_mapped=9310" >> sampleC.bam cat reference.idx >> sampleC.bam Run B # Stand-in for alignment; sleep models a runtime difference between runs. sleep 6 echo "sample=sampleC" > sampleC.bam echo "aligner=bwa-mem2:2.2.1" >> sampleC.bam echo "reads_mapped=9421" >> sampleC.bam cat reference.idx >> sampleC.bam | |
| cpus | 2 | 4 |
| memory | 4 GB | 8 GB |
| time | - | - |
| disk | - | - |
| realtime auto | 3.4s | 8s |
| %cpu | - | - |
| peak_rss | - | - |
| peak_vmem | - | - |
| rchar | - | - |
| wchar | - | - |
| read_bytes | - | - |
| write_bytes | - | - |
| syscr | - | - |
| syscw | - | - |
| vol_ctxt | - | - |
| inv_ctxt | - | - |
| attempt | 1 | 1 |
| queue | - | - |
| workdir auto | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/e1/3b0c3db8c515e299b5272f86f62c4c | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/d8/55b11993e9496a907357a2e1840a73 |
| tag | sampleC | sampleC |
| cpu_model | - | - |
| hostname | - | - |
| native_id auto | 53755 | 54046 |
changed
INDEX_REF (GRCh38)
INDEX_REF
▸
Realtime
| Field | Run A | Run B |
|---|---|---|
| hash auto | b0/a69613 | 5c/ac0b10 |
| status | COMPLETED | COMPLETED |
| exit | 0 | 0 |
| script |
Run A echo "index for GRCh38 built with samtools 1.15" > reference.idx Run B echo "index for GRCh38 built with samtools 1.19" > reference.idx | |
| cpus | 1 | 1 |
| memory | 1 GB | 1 GB |
| time | - | - |
| disk | - | - |
| realtime auto | 6.8s | 716ms |
| %cpu | - | - |
| peak_rss | - | - |
| peak_vmem | - | - |
| rchar | - | - |
| wchar | - | - |
| read_bytes | - | - |
| write_bytes | - | - |
| syscr | - | - |
| syscw | - | - |
| vol_ctxt | - | - |
| inv_ctxt | - | - |
| attempt | 1 | 1 |
| queue | - | - |
| workdir auto | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/b0/a69613978c9b7145307a809c01f4a4 | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/5c/ac0b101a3837df96a24defb2536586 |
| tag | GRCh38 | GRCh38 |
| cpu_model | - | - |
| hostname | - | - |
| native_id auto | 53714 | 53968 |
changed
MULTIQC (aggregate)
MULTIQC
▸
Realtime
| Field | Run A | Run B |
|---|---|---|
| hash auto | 85/a5d044 | 3c/a509a6 |
| status | COMPLETED | COMPLETED |
| exit | 0 | 0 |
| script |
Run A echo "MultiQC 1.13" > multiqc_report.txt echo "samples_reported=$(ls qc | wc -l)" >> multiqc_report.txt cat qc/* >> multiqc_report.txt Run B echo "MultiQC 1.21" > multiqc_report.txt echo "samples_reported=$(ls qc | wc -l)" >> multiqc_report.txt cat qc/* >> multiqc_report.txt | |
| cpus | 1 | 1 |
| memory | 1 GB | 1 GB |
| time | - | - |
| disk | - | - |
| realtime auto | 1.5s | 1.6s |
| %cpu | - | - |
| peak_rss | - | - |
| peak_vmem | - | - |
| rchar | - | - |
| wchar | - | - |
| read_bytes | - | - |
| write_bytes | - | - |
| syscr | - | - |
| syscw | - | - |
| vol_ctxt | - | - |
| inv_ctxt | - | - |
| attempt | 1 | 1 |
| queue | - | - |
| workdir auto | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/85/a5d044793e8e3eacdb98236c18e34a | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/3c/a509a67ca6421c785ba35a83d6106d |
| tag | aggregate | aggregate |
| cpu_model | - | - |
| hostname | - | - |
| native_id auto | 53880 | 54217 |
changed
QC (sampleA)
QC
▸
Realtime
| Field | Run A | Run B |
|---|---|---|
| hash auto | ae/f81329 | 20/7e6a80 |
| status | COMPLETED | COMPLETED |
| exit | 0 | 0 |
| container |
Run A quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0
Run B
community.wave.seqera.io/library/fastp:1.3.6--4df8d6c11b471bde
| |
| script |
Run A echo "sample=sampleA" > sampleA.qc.txt echo "fastqc=0.11.9" >> sampleA.qc.txt echo "gc_content=43" >> sampleA.qc.txt grep '^aligner' sampleA.bam >> sampleA.qc.txt if [ "false" = "true" ]; then echo "ERROR: adapter contamination above threshold for sampleA" >&2 echo "QC gate failed" >&2 exit 1 fi Run B echo "sample=sampleA" > sampleA.qc.txt echo "fastqc=0.12.1" >> sampleA.qc.txt echo "gc_content=41" >> sampleA.qc.txt grep '^aligner' sampleA.dedup.bam >> sampleA.qc.txt if [ "false" = "true" ]; then echo "ERROR: adapter contamination above threshold for sampleA" >&2 echo "QC gate failed" >&2 exit 1 fi | |
| cpus | 1 | 1 |
| memory | 1 GB | 1 GB |
| time | - | - |
| disk | - | - |
| realtime auto | 1.8s | 1.1s |
| %cpu | - | - |
| peak_rss | - | - |
| peak_vmem | - | - |
| rchar | - | - |
| wchar | - | - |
| read_bytes | - | - |
| write_bytes | - | - |
| syscr | - | - |
| syscw | - | - |
| vol_ctxt | - | - |
| inv_ctxt | - | - |
| attempt | 1 | 1 |
| queue | - | - |
| workdir auto | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/ae/f81329969ece3f0859c0b051997aa6 | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/20/7e6a801fb394f7e5b872937b99960a |
| tag | sampleA | sampleA |
| cpu_model | - | - |
| hostname | - | - |
| native_id auto | 53814 | 54111 |
changed
QC (sampleB)
QC
▸
Realtime
| Field | Run A | Run B |
|---|---|---|
| hash auto | 20/432413 | e6/c6aef4 |
| status | COMPLETED | FAILED |
| exit | 0 | 1 |
| container |
Run A quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0
Run B
community.wave.seqera.io/library/fastp:1.3.6--4df8d6c11b471bde
| |
| script |
Run A echo "sample=sampleB" > sampleB.qc.txt echo "fastqc=0.11.9" >> sampleB.qc.txt echo "gc_content=43" >> sampleB.qc.txt grep '^aligner' sampleB.bam >> sampleB.qc.txt if [ "false" = "true" ]; then echo "ERROR: adapter contamination above threshold for sampleB" >&2 echo "QC gate failed" >&2 exit 1 fi Run B echo "sample=sampleB" > sampleB.qc.txt echo "fastqc=0.12.1" >> sampleB.qc.txt echo "gc_content=41" >> sampleB.qc.txt grep '^aligner' sampleB.dedup.bam >> sampleB.qc.txt if [ "true" = "true" ]; then echo "ERROR: adapter contamination above threshold for sampleB" >&2 echo "QC gate failed" >&2 exit 1 fi | |
| cpus | 1 | 1 |
| memory | 1 GB | 1 GB |
| time | - | - |
| disk | - | - |
| realtime auto | 1.7s | 1.3s |
| %cpu | - | - |
| peak_rss | - | - |
| peak_vmem | - | - |
| rchar | - | - |
| wchar | - | - |
| read_bytes | - | - |
| write_bytes | - | - |
| syscr | - | - |
| syscw | - | - |
| vol_ctxt | - | - |
| inv_ctxt | - | - |
| attempt | 1 | 1 |
| queue | - | - |
| workdir auto | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/20/43241326623b8839717fa4f0497280 | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/e6/c6aef489442590097b06dd61317004 |
| tag | sampleB | sampleB |
| cpu_model | - | - |
| hostname | - | - |
| native_id auto | 53844 | 54110 |
changed
QC (sampleC)
QC
▸
Realtime
| Field | Run A | Run B |
|---|---|---|
| hash auto | 09/e181f9 | d9/18e478 |
| status | COMPLETED | COMPLETED |
| exit | 0 | 0 |
| container |
Run A quay.io/biocontainers/fastqc:0.12.1--hdfd78af_0
Run B
community.wave.seqera.io/library/fastp:1.3.6--4df8d6c11b471bde
| |
| script |
Run A echo "sample=sampleC" > sampleC.qc.txt echo "fastqc=0.11.9" >> sampleC.qc.txt echo "gc_content=43" >> sampleC.qc.txt grep '^aligner' sampleC.bam >> sampleC.qc.txt if [ "false" = "true" ]; then echo "ERROR: adapter contamination above threshold for sampleC" >&2 echo "QC gate failed" >&2 exit 1 fi Run B echo "sample=sampleC" > sampleC.qc.txt echo "fastqc=0.12.1" >> sampleC.qc.txt echo "gc_content=41" >> sampleC.qc.txt grep '^aligner' sampleC.dedup.bam >> sampleC.qc.txt if [ "false" = "true" ]; then echo "ERROR: adapter contamination above threshold for sampleC" >&2 echo "QC gate failed" >&2 exit 1 fi | |
| cpus | 1 | 1 |
| memory | 1 GB | 1 GB |
| time | - | - |
| disk | - | - |
| realtime auto | 1.9s | 2.2s |
| %cpu | - | - |
| peak_rss | - | - |
| peak_vmem | - | - |
| rchar | - | - |
| wchar | - | - |
| read_bytes | - | - |
| write_bytes | - | - |
| syscr | - | - |
| syscw | - | - |
| vol_ctxt | - | - |
| inv_ctxt | - | - |
| attempt | 1 | 1 |
| queue | - | - |
| workdir auto | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/09/e181f978bf887b0c0c610fb5eb813a | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/d9/18e478a59806e258f95c2853ace070 |
| tag | sampleC | sampleC |
| cpu_model | - | - |
| hostname | - | - |
| native_id auto | 53812 | 54189 |
added
MARKDUP (sampleA)
MARKDUP
▸
Only present in Run B
| hash | 48/36b763 | |
|---|---|---|
| status | COMPLETED | |
| exit | 0 | |
| container | quay.io/biocontainers/prinseq-plus-plus:1.2.3--hc90279e_1 | |
| script | grep -v '^duplicates' sampleA.bam > sampleA.dedup.bam echo "duplicates_removed=312" >> sampleA.dedup.bam | |
| cpus | 1 | |
| memory | 2 GB | |
| time | - | |
| disk | - | |
| realtime | 1.2s | |
| %cpu | - | |
| peak_rss | - | |
| peak_vmem | - | |
| rchar | - | |
| wchar | - | |
| read_bytes | - | |
| write_bytes | - | |
| syscr | - | |
| syscw | - | |
| vol_ctxt | - | |
| inv_ctxt | - | |
| attempt | 1 | |
| queue | - | |
| workdir | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/48/36b7630fadb037eb67ab30700a44b1 | |
| tag | sampleA | |
| cpu_model | - | |
| hostname | - | |
| native_id | 54054 | |
added
MARKDUP (sampleB)
MARKDUP
▸
Only present in Run B
| hash | 5c/b0815a | |
|---|---|---|
| status | COMPLETED | |
| exit | 0 | |
| container | quay.io/biocontainers/prinseq-plus-plus:1.2.3--hc90279e_1 | |
| script | grep -v '^duplicates' sampleB.bam > sampleB.dedup.bam echo "duplicates_removed=312" >> sampleB.dedup.bam | |
| cpus | 1 | |
| memory | 2 GB | |
| time | - | |
| disk | - | |
| realtime | 1.2s | |
| %cpu | - | |
| peak_rss | - | |
| peak_vmem | - | |
| rchar | - | |
| wchar | - | |
| read_bytes | - | |
| write_bytes | - | |
| syscr | - | |
| syscw | - | |
| vol_ctxt | - | |
| inv_ctxt | - | |
| attempt | 1 | |
| queue | - | |
| workdir | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/5c/b0815a915ec92caafb0d20d022a760 | |
| tag | sampleB | |
| cpu_model | - | |
| hostname | - | |
| native_id | 54055 | |
added
MARKDUP (sampleC)
MARKDUP
▸
Only present in Run B
| hash | f7/d8ce01 | |
|---|---|---|
| status | COMPLETED | |
| exit | 0 | |
| container | quay.io/biocontainers/prinseq-plus-plus:1.2.3--hc90279e_1 | |
| script | grep -v '^duplicates' sampleC.bam > sampleC.dedup.bam echo "duplicates_removed=312" >> sampleC.dedup.bam | |
| cpus | 1 | |
| memory | 2 GB | |
| time | - | |
| disk | - | |
| realtime | 1.2s | |
| %cpu | - | |
| peak_rss | - | |
| peak_vmem | - | |
| rchar | - | |
| wchar | - | |
| read_bytes | - | |
| write_bytes | - | |
| syscr | - | |
| syscw | - | |
| vol_ctxt | - | |
| inv_ctxt | - | |
| attempt | 1 | |
| queue | - | |
| workdir | /Users/mribeirodantas/dev/work/nf-diff/examples/rich-report/work/f7/d8ce0142fa76879e9017380257cb4d | |
| tag | sampleC | |
| cpu_model | - | |
| hostname | - | |
| native_id | 54166 | |
Output files
Output files compared by size, then SHA-256 for same-size files, from each task's work directory as it exists now. Changed text files are additionally diffed line by line (first 1000 lines per file; binary files show a size/hash change only).
outputs
ALIGN (sampleA)
ALIGN
▸
| File | Run A | Run B |
|---|---|---|
| sampleA.bam changed | 94 B | 98 B |
sampleA.bam +3 −3
sample=sampleA aligner=bwa:0.7.17 reads_mapped=9310 index for GRCh38 built with samtools 1.15 aligner=bwa-mem2:2.2.1 reads_mapped=9421 index for GRCh38 built with samtools 1.19
outputs
ALIGN (sampleB)
ALIGN
▸
| File | Run A | Run B |
|---|---|---|
| sampleB.bam changed | 94 B | 98 B |
sampleB.bam +3 −3
sample=sampleB aligner=bwa:0.7.17 reads_mapped=9310 index for GRCh38 built with samtools 1.15 aligner=bwa-mem2:2.2.1 reads_mapped=9421 index for GRCh38 built with samtools 1.19
outputs
ALIGN (sampleC)
ALIGN
▸
| File | Run A | Run B |
|---|---|---|
| sampleC.bam changed | 94 B | 98 B |
sampleC.bam +3 −3
sample=sampleC aligner=bwa:0.7.17 reads_mapped=9310 index for GRCh38 built with samtools 1.15 aligner=bwa-mem2:2.2.1 reads_mapped=9421 index for GRCh38 built with samtools 1.19
outputs
INDEX_REF (GRCh38)
INDEX_REF
▸
| File | Run A | Run B |
|---|---|---|
| reference.idx changed | 42 B · e6ddf15cbfed | 42 B · 83e8707579f0 |
reference.idx +1 −1
index for GRCh38 built with samtools 1.15 index for GRCh38 built with samtools 1.19
outputs
MULTIQC (aggregate)
MULTIQC
▸
| File | Run A | Run B |
|---|---|---|
| multiqc_report.txt changed | 218 B | 164 B |
multiqc_report.txt +8 −12
MultiQC 1.13 samples_reported=3 MultiQC 1.21 samples_reported=2 sample=sampleA fastqc=0.11.9 gc_content=43 aligner=bwa:0.7.17 sample=sampleB fastqc=0.11.9 gc_content=43 aligner=bwa:0.7.17 fastqc=0.12.1 gc_content=41 aligner=bwa-mem2:2.2.1 sample=sampleC fastqc=0.11.9 gc_content=43 aligner=bwa:0.7.17 fastqc=0.12.1 gc_content=41 aligner=bwa-mem2:2.2.1
outputs
QC (sampleA)
QC
▸
| File | Run A | Run B |
|---|---|---|
| sampleA.qc.txt changed | 62 B | 66 B |
sampleA.qc.txt +3 −3
sample=sampleA fastqc=0.11.9 gc_content=43 aligner=bwa:0.7.17 fastqc=0.12.1 gc_content=41 aligner=bwa-mem2:2.2.1
outputs
QC (sampleB)
QC
▸
| File | Run A | Run B |
|---|---|---|
| sampleB.qc.txt changed | 62 B | 66 B |
sampleB.qc.txt +3 −3
sample=sampleB fastqc=0.11.9 gc_content=43 aligner=bwa:0.7.17 fastqc=0.12.1 gc_content=41 aligner=bwa-mem2:2.2.1
outputs
QC (sampleC)
QC
▸
| File | Run A | Run B |
|---|---|---|
| sampleC.qc.txt changed | 62 B | 66 B |
sampleC.qc.txt +3 −3
sample=sampleC fastqc=0.11.9 gc_content=43 aligner=bwa:0.7.17 fastqc=0.12.1 gc_content=41 aligner=bwa-mem2:2.2.1
Task logs
Task stdout/stderr (.command.out/.err/.log) compared line by line, tailed to the last 200 lines per file. Logs are informational only — they never affect the "identical" verdict or --fail-on-change.
failure
QC (sampleB)
QC
▸
exit 0 → 1 · status COMPLETED → FAILED
.command.err changed
ERROR: adapter contamination above threshold for sampleB QC gate failed
.command.log changed
ERROR: adapter contamination above threshold for sampleB QC gate failed
Process wiring (DAG)
Process wiring read from the Nextflow data-lineage store (each task's recorded input provenance), so it is authoritative and needs no work directories. Informational only — it never affects the "identical" verdict or --fail-on-change.
Unchanged (both runs)
Added in B
Removed (only in A)
| Producer | Consumer | |
|---|---|---|
| ALIGN | MARKDUP | added |
| MARKDUP | QC | added |
| ALIGN | QC | removed |